FastQCFastQC Report
Sun 21 May 2023
EGAF00007944109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489066
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14590.2983237436256047No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11760.2404583430457239No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8210.1678710030956967No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8170.167053117575133No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6300.12881696948878066No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6220.1271811984476533No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5960.12186494256398932No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5550.11348161597821153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)