FastQCFastQC Report
Sun 21 May 2023
EGAF00007944110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489066
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22040.45065492183059136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14230.29096277394053155No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13760.28135261907390824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10310.21080999292529023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8430.17236937345879697No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7680.15703401994822785No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6970.1425165519582224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.1329063970915991No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5980.12227388532427116No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5140.10509828939243374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)