FastQCFastQC Report
Wed 31 May 2023
EGAF00007944112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467146
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40910.8757433436227646No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20700.4431162848445668No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14490.31018139939119677No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9390.20100782196572378No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8290.17746057977591587No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6660.14256784816738235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6610.14149751897693655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.13528960967235082No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4880.1044641289875114No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4810.10296566812088725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)