FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517268
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31910.6168949171415977No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26850.5190732850282639No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25240.48794822026493034No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17350.33541607058623385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16380.3166637023747844No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14660.2834120803915958No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13200.2551868663826102No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11200.21652218965797226No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10400.2010563189681171No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10020.1937100303904359No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8200.15852517457101542No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7680.14847235862260955No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7070.136679632221595No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6830.13203987101463843No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6790.1312665774801457No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6730.13010663717840656No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6520.1260468461223196No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6400.12372696551884128No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6390.12353364213521811No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6010.11618735355753691No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5690.11000100528159484No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5570.10768112467811657No Hit

[OK]Adapter Content

Adapter graph