FastQCFastQC Report
Sun 21 May 2023
EGAF00007944116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420416
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT95842.279646826000913No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34660.8244215253463236No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21230.5049760237479068No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC18730.4455111128025575No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15170.36083307961637995No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12660.3011303090272492No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11890.2828151164560816No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11510.2737764499923885No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11360.27020855533566757No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11320.2692571167605419No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10030.23857322271274164No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9390.22335020551073223No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9320.22168518800426246No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8790.2090786268838484No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7920.1883848378748668No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7850.18671982036839702No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7450.1772054346171411No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7090.16864248744101082No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6620.15746308418328514No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6460.15365732988278277No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6100.14509438270665245No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6090.14485652306287106No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6070.14438080377530826No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5960.1417643476937129No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5450.12963350586086161No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5280.12558989191657788No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5270.12535203227279648No Hit
GACTCCGAAGGCCACAGCGAGGACTCTGATA4830.11488620794641498No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4790.1139347693712894No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4740.1127454711523824No Hit
ATGAAACCGCGCGCGCGTCGCCGTAAACGTG4640.11036687471456842No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4600.10941543613944285No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4430.10537182219515907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)