FastQCFastQC Report
Wed 31 May 2023
EGAF00007944118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445742
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17760.39843676386788773No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16290.3654580452369308No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13870.31116654925943704No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12610.2828990761471883No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11430.2564263632325426No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9900.22210157445338335No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9890.22187722942868296No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9360.20998694311956242No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8690.1949558264646365No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7420.16646400832768732No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7220.16197710783367958No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7180.16107972773487803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6550.14694599117875362No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5630.126306248906318No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5590.12540886880751645No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4790.10746126683148548No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4680.10499347155978121No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4630.10387174643627928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)