FastQCFastQC Report
Wed 31 May 2023
EGAF00007944122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466207
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37870.8123001156138797No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24020.5152217791667649No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG19320.4144081920691881No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18180.3899555347731802No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15000.3217454907369473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14240.30544371920627533No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14080.3020117673050812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13630.29235940258297277No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12640.27112420019433425No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11750.2520339677439421No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11640.24967450081187112No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11380.2440975789724307No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11040.23680468118239323No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9530.20441563511487387No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8360.179319486837392No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8130.17438605597942544No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7990.17138309806588062No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7570.16237422432524606No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA7470.16022925438699975No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7340.15744079346727957No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5990.1284836993009543No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5910.12676772335035724No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5550.11904583157267051No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5450.11690086163442419No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5410.11604287365912568No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5360.11497038869000252No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5330.11432689770852862No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGG5310.11389790372087936No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5290.11346890973323008No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5140.11025145482586063No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5010.1074629939061404No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4710.10102808409140146No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4710.10102808409140146No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4710.10102808409140146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)