FastQCFastQC Report
Sun 21 May 2023
EGAF00007944126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459175
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18770.4087766102248598No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18730.4079054826591169No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14740.3210105079762618No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12460.271356236728916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11850.25807154135133664No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11000.2395600805792998No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9930.21625741819567704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8870.19317253770348997No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7920.17248325801709588No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7440.162029727228181No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7390.16094081777100233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.15919856263951654No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6520.1419937932160941No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6180.13458920890727935No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5990.13045135297000054No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5970.13001578918712908No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5720.1245712419012359No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5520.12021560407252138No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5350.11651331191811401No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5230.11389992922088528No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4660.10148636140904883No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4600.10017967006043449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)