FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494125
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT19460.3938274728054642No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG17080.34566152289400454No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13870.2806982038957754No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT13850.28029344801416645No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12740.25782949658487225No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG12260.24811535542625854No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC10540.21330634960789271No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10180.20602074373893245No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8200.1659499114596509No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7780.1574500379458639No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGAC7230.146319251201619No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7210.1459144953200101No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6990.14146218062231217No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6880.13923602327346318No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6780.13721224386541866No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5090.10301037186946622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)