FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494125
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22910.46364786238300026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT22580.4569693903364533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG20010.4049582595497091No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17550.3551732861118138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC14760.2987098406273716No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14390.2912218568176069No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13620.27563875537566407No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG12040.24366304072856057No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC10890.2203895775360486No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG9990.20217556286364785No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8820.17849734378952695No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7110.1438907159119656No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7100.14368833797116115No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGCTG6980.14125980268150773No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6850.13862888945104984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5920.11980774095623577No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5790.1171768277257779No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4950.1001770806982039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)