FastQCFastQC Report
Wed 31 May 2023
EGAF00007944133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492429
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12990.2637943744174287No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9760.19820116199492718No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8370.16997374240753488No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7590.15413389544482553No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6620.13443562422196906No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6500.13199872468924453No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4960.1007251806859466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)