FastQCFastQC Report
Wed 31 May 2023
EGAF00007944134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492429
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20150.4091960465366581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12890.26176362480682497No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12510.2540467762865306No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7480.1519000708731614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6710.13626329887151245No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.11758040245395784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5250.10661435455669752No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4940.10031903076382585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)