FastQCFastQC Report
Wed 31 May 2023
EGAF00007944135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493669
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13430.27204462909358296No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9150.18534686196621625No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8140.16488780944316941No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6860.1389595052555457No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6640.1345030779732979No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6530.132274864332174No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5540.11222094156205879No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5230.10594143039161867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)