FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477206
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36160.757744035070808No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT35660.7472663797186121No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT23370.4897256111616367No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22020.46143594171070773No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC21180.4438334807190187No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC18390.38536816385376543No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16960.3554020695464852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT15050.31537742610109676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC14880.3118150232813502No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC14690.3078335142475157No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13140.27535278265570845No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC11650.24412936970616464No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9900.20745757597347897No Hit
CGTCTGGACCGCGGTCAGACTTGGGTGATCAAC9340.19572260197901953No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC9200.1927888584804047No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9140.19153153983814117No Hit
TGGGCTGCGTCCACCCCGATCGGTGGCGGTCGT8540.1789583534155061No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8170.17120488845488113No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG7960.16680427320695884No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA7740.16219410485199265No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6890.14438209075325958No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6520.13662862579263463No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5780.12112169587138467No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5590.11714018683755024No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5400.11315867780371579No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5320.11148225294736445No Hit
GGTGGTCGCCGTCTGGATCGTGGTCAGACCTGG5220.10938672187692526No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4830.10121415070221246No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4810.10079504448812462No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCCGT4800.1005854913810807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)