FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448454
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19560.4361651362235592No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19540.4357191596016537No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16660.37149852604726463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16240.36213301698724953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12130.27048482118567346No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11580.25822046408327276No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9640.21496073175844124No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8120.18106650849362477No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7950.1772757072074282No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7830.1745998474759953No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7710.1719239877445624No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC7160.15965963064216174No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6620.14761826185071378No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6350.1415975774549898No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6250.1393676943454624No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5200.11595392169542473No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4920.10971024898874801No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4770.1063654243244569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)