FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554300
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13750.24806061699440737No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13680.24679776294425404No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10590.1910517770160563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10510.18960851524445246No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9220.16633591917734078No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGAC8490.15316615551145588No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8320.15009922424679775No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7280.13133682121594803No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6900.12448132780082986No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6680.12051235792891937No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG6490.11708461122136027No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6310.11383727223525167No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6090.10986830236334115No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG5700.1028324012267725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)