FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554300
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24190.4364062781887065No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17130.309038426844669No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14120.25473570268807505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11970.21594804257622224No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10840.19556197005231823No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGGGT8910.160743279812376No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8890.160382464369475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7390.13332130615190332No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7000.12628540501533467No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6680.12051235792891937No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6560.11834746527151362No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT6540.11798664982861266No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6490.11708461122136027No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5700.1028324012267725No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5660.1021107703409706No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5630.10156954717661915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)