FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445943
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10080.2260378568561453No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8960.20092253942768473No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8040.18029210011144922No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6310.14149790444070207No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6050.1356675628948094No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5770.12938873353769428No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAA4580.1027037087699549No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4500.10090975752506486No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA4460.10001278190261984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)