FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445943
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21550.48324561659225507No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10160.22783180810103534No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9730.21818932015975137No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8750.19621341740984835No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6700.150243416759541No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6640.14889795332587347No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6040.13544331898919817No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5100.11436439186174018No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4860.10898253812707005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG4860.10898253812707005No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC4830.1083098064102363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)