FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467889
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10810.23103770338691443No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10350.22120631175342867No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9470.20239843210676034No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT9410.2011160766763057No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9290.1985513658153964No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9240.1974827362900175No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT9110.19470429952403243No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8630.18444545608039514No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7850.16777483548448457No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7610.16264541376266592No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7600.16243168785759016No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7230.15452382936978643No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6570.14041791963478517No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6260.1337924165774361No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6220.13293751295713302No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5570.11904532912720753No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5490.1173355218866013No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5260.11241982606985845No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5190.11092374473432802No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG4980.10643550072773669No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4910.10493941939220627No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4850.10365706396175162No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG4740.10130607900591806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)