FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467889
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19270.4118498190810214No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18300.39111840628867106No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12170.26010442647722No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10780.23039652567168706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10430.2229161189940349No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9690.20710040201842744No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC9520.20346706163213926No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8340.17824740483319762No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8140.1739728867316821No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7780.16627875414895413No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7430.15879834747130195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7260.15516500708501374No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7200.15388265165455908No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7170.15324147393933177No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6240.13336496476728454No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6150.13144143162160257No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6110.13058652800129947No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5970.12759436533023857No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5580.1192590550322833No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG5530.11819042550690441No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5520.11797669960182863No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5460.11669434417137398No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5310.11348845559523733No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5170.11049629292417647No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5000.10686295253788824No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4680.10002372357546341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)