FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453140
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11490.2535640199496844No Hit
CGGACGGTATTTGGTACCGTTTGCCAGTTTCAGCGGGGTCT10820.23877830251136511No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10570.23326124376572363No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10040.22156507922496357No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9680.2136205146312398No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8280.18272498565564727No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8270.1825043033058216No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7370.16264289182151212No Hit
TTCCAGAAAGCCGGCAATTGCACCGAAGAAGCCGCGTTCCT7250.15999470362360418No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7170.1582292448249989No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7060.15580173897691663No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCC7050.15558105662709096No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA6990.154256962528137No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC6740.14873990378249546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5980.13196804519574526No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5620.12402348060202145No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5530.12203733945359051No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5500.12137529240411353No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG5400.1191684689058569No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5290.11674096305777464No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5230.11541686895882068No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5080.11210663371143577No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5010.11056185726265612No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4860.10725162201527122No Hit
AATAGACGCAGAGTTGTTACGAGCAGTCACTTTAGATGCGC4860.10725162201527122No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4830.10658957496579424No Hit
ACACACCCAACCGCGGTCAATTTTCGGGCTAGGCGGAACCG4780.10548616321666593No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA4670.10305865736858366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)