FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453140
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20010.44158538200114755No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19070.4208412411175354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15970.3524297126715805No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15110.3334510305865737No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTCTG11180.24672286710508895No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10390.2292889614688617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10370.22884759676921038No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9090.2006002559915258No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7780.1716908681643642No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7740.17080813876506157No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7650.1688219976166306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7590.16749790351767666No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT7370.16264289182151212No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA7010.1546983272277883No Hit
TGTCTGCACGAAAAATATGGTGGTCTGAACAAA6970.15381559782848567No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC6800.15006399788144942No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6240.1377057862912124No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6010.13263009224522224No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5820.12843712759853465No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5560.1226993865030675No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5440.12005119830515955No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5360.11828573950655426No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5290.11674096305777464No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5240.11563755130864634No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC5210.11497550425916936No Hit
CCGCAGTGCGCCCTGATCCAGATCACCAAACGT5050.11144458666195879No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT4930.10879639846405084No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.10857571611422517No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4770.10526548086684027No Hit
GGTGCCGGCAAAGCACTGTCTGCAGTCAAAGAT4660.10283797501875801No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTGGT4560.10063115152050138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)