FastQCFastQC Report
Wed 31 May 2023
EGAF00007944152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450054
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG48981.0883138467828304No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21800.4843863180862741No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18330.40728445919822953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12990.2886320308229679No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8170.1815337715029752No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7810.17353473138778902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7630.16953521133019595No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6660.1479822421309443No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6620.1470934598959236No Hit
CATTCTAACGATCAGCACGCGGGTGATCACATC6240.1386500286632271No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5840.1297622063130202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)