FastQCFastQC Report
Wed 31 May 2023
EGAF00007944153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469048
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12860.2741723661544235No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG12280.26180689396394397No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10330.22023332366836657No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10310.2198069280755914No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9780.20850744486704983No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8090.17247701727754944No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA7510.16011154508706998No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7510.16011154508706998No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6840.14582729272910236No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6790.14476130374716448No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6780.14454810595077688No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6390.13623339189166142No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6210.13239583155668502No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5890.12557350207228257No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT5730.12216233733008135No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC5560.11853797479149256No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG5550.11832477699510499No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5490.11704559021677953No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5320.11342122767819071No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5260.11214204089986526No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5030.10723849158295098No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4940.10531971141546281No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT4820.10276133785881189No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4780.10190854667326157No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4730.1008425576913237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)