FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469048
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG28390.6052685439443298No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21310.4543245041019256No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG13060.27843632208217495No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10490.22364448841056778No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10460.22300489502140508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10220.21788814790810324No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10180.2170353567225529No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8080.17226381948116185No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC7680.1637359076256588No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7520.16032474288345755No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7050.15030444645324145No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6920.14753287510020296No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6820.1454008971363272No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6760.14412171035800175No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6560.13985775443025023No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6470.13793897426276203No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5780.12322832631201923No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC5610.11960396377343045No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5550.11832477699510499No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5510.11747198580955467No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5500.1172587880131671No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5120.1091572717504392No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC4940.10531971141546281No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC4860.10361412904436221No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4830.10297453565519946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)