FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462616
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7910.17098414235564702No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7370.15931139433136768No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6210.13423660227921214No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5400.11672748024279317No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5250.1134850502360489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)