FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458992
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA28400.6187471677066266No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG24990.5444539338376267No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15110.32919963746644826No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13470.2934691672186007No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12500.2723359012793251No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11760.2562136159235891No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10600.23094084428486772No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9230.20109282950465365No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC9210.20065709206260676No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9100.1982605361313487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7700.16775891518806427No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG7650.16666957158294698No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6840.14902220518004672No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6720.14640778052776518No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6510.14183253738627252No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6350.13834663784989715No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6180.13464286959249835No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC6130.13355352598738104No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6120.13333565726635757No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5850.12745320179872416No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5850.12745320179872416No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5710.12440303970439572No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5550.12091714016802037No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5470.11917419039983268No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5380.11721337191062155No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5250.11438107853731655No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT4620.10065534911283856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)