FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458992
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG64261.4000244012967547No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30140.6566563251647087No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16950.36928748213476487No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13420.29237982361348347No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11920.25969951545996445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11660.2540349287133545No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11100.24183428033604074No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10210.22244396416495277No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT9690.21111479067173283No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8230.17930595740230768No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA7940.17298776449262732No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7080.15425105448460974No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6730.14662564924878863No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6580.14335761843343675No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC6190.13486073831352183No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6070.1322463136612403No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6040.1315927074981699No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5730.12483877714644263No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5640.1228779586572315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5470.11917419039983268No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5260.11459894725834002No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5030.10958796667480043No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC4710.1026161676020497No Hit

[OK]Adapter Content

Adapter graph