FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462214
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5950.12872825141601074No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5550.12007425132081677No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5480.11855980130415782No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5370.11617995127797946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5330.11531455126846006No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4980.10774230118516533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)