FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462214
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13230.2862310531485416No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9980.2159173023750903No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7690.16637315183010468No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.12678110139459212No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5580.1207233013279563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5550.12007425132081677No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5100.11033850121372352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)