FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500490
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8610.1720314092189654No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8460.16903434634058623No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7970.15924394093788088No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7120.14226058462706548No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6200.12387859897300645No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5540.11069152230813802No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5420.10829387200543468No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGAC5390.10769445942975883No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5260.10509700493516354No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5230.1044975923594877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)