FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500490
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13980.27932626026494034No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11650.23277188355411696No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11040.22058382784870828No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9330.18641731103518552No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8430.1684349337649104No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6800.1358668504865232No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6770.13526743791084736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.1170852564486803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5630.11248976003516555No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTTCC5560.11109113069192192No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5140.10269935463246017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)