FastQCFastQC Report
Wed 8 May 2024
EGAF00007944171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460841
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7540.1636139145605534No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7390.16035899583587396No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7050.1529811800599339No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7040.1527641854782886No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6840.14842429384538267No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6660.14451839137576736No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6310.13692358101818197No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5860.12715882484414365No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG5850.12694183026249833No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5830.12650784109920776No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG5370.11652609034352414No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5140.11153521496568229No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT4650.10090248046506278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)