FastQCFastQC Report
Wed 31 May 2023
EGAF00007944172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460841
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21840.47391616631332717No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15690.34046449860146993No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10820.23478813734021062No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8570.18596435647001894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8090.17554861655104473No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7160.15536812045803217No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6810.1477733101004468No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6680.14495238053905793No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6210.134753635201729No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6020.13063073815046838No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5790.12563986277262656No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5440.11804505241504118No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC5350.11609210118023353No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5210.11305417703719937No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4750.10307242628151575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4650.10090248046506278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)