FastQCFastQC Report
Wed 31 May 2023
EGAF00007944175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460572
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA24640.5349869292966137No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC19600.425557784667761No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG18390.3992861051040879No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15980.34695986729545003No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC14520.315260154764076No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12880.2796522584959572No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11850.25728876266902895No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11650.2529463362948681No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA10540.22884586991827552No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10190.2212466237634941No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7820.1697888712296883No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC7580.1645779595806953No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG7210.15654447078849779No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG7030.15263628705175303No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6970.1513335591395048No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6900.1498137099085485No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6350.1378720373796062No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6330.13743779474219014No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG6250.1357008241925258No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6170.13396385364286148No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGT5810.126147486169372No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5700.12375915166358353No Hit
CAGGGACGGACCACCGGCAGCGATCATAGAGCTGAACGGGC5530.12006808924554685No Hit
ACGACCAGACAGCGGGGTGGTCTTGCCCGGTTTCGGGCGTT5330.11572566287138603No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5290.11485717759655385No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGA4910.10660656748564827No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGT4880.10595520352952416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)