FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460572
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30560.6635227499717743No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA24130.5239137420425036No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG21100.45812598247396713No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG17840.38734443257514567No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17160.3725801829029989No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT16130.3502166870760706No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT14670.31851697454469663No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12780.2774810453088768No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC12660.2748755894843803No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12160.26401952354897823No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11380.24708406068975097No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10450.22689177804990318No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA8220.17847372397800995No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG8050.17478266155997324No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7400.16066977584395056No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7060.15328765100787717No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6570.14264870639118313No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6400.13895764397314644No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGTCC6320.1372206734234821No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6220.13504946023640169No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5920.12853582067516045No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCTGG5560.12071945320167098No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGGAA5540.12028521056425488No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5380.11681126946492622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5160.11203460045334931No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCACC5100.11073187254110108No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4920.10682368880435632No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCATAC4910.10660656748564827No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4870.10573808221081613No Hit
CTGAAATACCAGGAATTTTTCTGGGACGCCAAC4670.1013956558366553No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4640.10074429188053116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)