FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457211
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10550.23074685429703137No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9200.20122000564290884No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6480.14172887353978797No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6230.13626093860383937No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6010.1314491558602046No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5820.12729352530888363No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5750.12576250352681803No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5610.12270045996268682No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5430.11876354680880383No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4940.10804639433434453No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4940.10804639433434453No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4910.10739024214203072No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG4860.10629665515484099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)