FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457211
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22880.5004254053380168No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12830.2806144209128827No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10630.2324965934765349No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9920.21696765825844083No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7690.16819367862977924No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7380.161413439309203No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6860.15004013464242988No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6350.13888554737309472No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6130.1340737646294599No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5690.12445019914219037No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5580.12204430777037298No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5550.12138815557805914No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5350.11701380762930025No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5020.1097961335138481No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4970.10870254652665837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT4630.10126615501376826No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4610.10082872021889236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)