FastQCFastQC Report
Sun 21 May 2023
EGAF00007944179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492818
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16220.3291275886838549No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14780.2999078767415151No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12710.25790454082440173No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG10490.21285748491329456No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9770.1982476289421247No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9490.19256601828666972No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9030.1832319436384223No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6470.13128578907426272No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6110.12398086108867776No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5860.11890799443202156No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5380.10916809045124164No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5330.10815351711991039No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5130.10409522379458541No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5090.10328356512952043No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5040.10226899179818918No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG4990.10125441846685794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)