FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences306189
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9160.2991616289285376No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6320.20640846013410016No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG4800.15676591908919No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4720.15415315377103686No Hit
CAGGGTATCGTGTGCGTAAGTATCGTTGTCGTTGAACAGGA3820.12475954394181371No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT3640.11888082197596908No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAG3570.11659465232258506No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA3410.11136912168627873No Hit
GCATTTACCGAAGTGGGACAGGGTCAGAGTACCGTTGCTTT3260.10647018671474154No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG3220.10516380405566497No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTT3210.10483720839089582No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA3070.10026486908412777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)