FastQCFastQC Report
Wed 31 May 2023
EGAF00007944182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences306189
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9060.2958956722808462No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6570.21457335175332884No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5450.1779946372991845No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5390.17603506331056962No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5180.16917655435041756No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT4860.15872549307780487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4010.13096486157242748No Hit
CTGGTTGATGAAGGTAAAGTCGATCTGGACGCT3860.1260659266008903No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC3810.12443294827704457No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC3810.12443294827704457No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC3580.11692124798735422No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAACCG3450.11267550434535531No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC3410.11136912168627873No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTTCT3370.11006273902720216No Hit
GCAGTTTCTGTTGACTGCTCTGAATACCCGAAA3210.10483720839089582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)