FastQCFastQC Report
Wed 31 May 2023
EGAF00007944183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428488
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8760.2044397976139355No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8500.1983719497395493No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7970.1860028752263774No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7810.18226881499598588No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7640.1783013760011949No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7100.16569892272362352No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6740.1572972872052426No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6700.15636377214764474No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6610.1542633632680495No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6200.14469483392767127No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6110.142594425048076No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6030.14072739493288028No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5940.13862698605328502No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5360.12509101771811582No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG5350.12485763895371634No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5120.11948992737252852No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5030.1173895184929333No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4990.11645600343533542No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4360.10175314127816881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)