FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516931
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14950.2892068767398357No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG8980.1737175754597809No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8760.16946168831043215No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8250.1595957681005782No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8000.154759532703591No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT7590.14682810665253196No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7410.14334601716670117No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7360.14237877008730374No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC7070.13676873702679856No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6400.1238076261628728No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5990.11587620011181378No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5890.11394170595301888No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT5700.11026616705130858No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5580.10794477406075471No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5410.10465613399080341No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT5290.10233474100024954No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5270.10194784216849057No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5200.10059369625733416No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5190.10040024684145467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)