FastQCFastQC Report
Sun 21 May 2023
EGAF00007944186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516931
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24640.47665936072706033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18410.3561403746341388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14830.2868854837492818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12380.23949037685880706No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10710.20718432440693246No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10270.19867255010823495No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9450.18280969800611688No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA9120.17642586728209375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8030.15533988095122947No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG7510.14528051132549605No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA7470.1445067136619781No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7420.14353946658258065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6990.13522114169976263No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6250.12090588492468046No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5950.11510240244829581No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5940.11490895303241631No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGATC5760.11142686354658551No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5640.10910547055603165No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5430.1050430328225624No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC5420.1048495834066829No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5390.10426923515904443No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5380.10407578574316495No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5340.10330198807964698No Hit

[OK]Adapter Content

Adapter graph