FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477709
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8380.1754206012446908No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7200.15071937099782504No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6720.14067141293130336No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6080.12727413550927447No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6020.12601814075095927No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5900.12350615123432884No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5260.11010887381229996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)