FastQCFastQC Report
Sun 21 May 2023
EGAF00007944200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences599638
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41150.6862473692461118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33590.560171303353023No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21310.3553810799182173No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20900.34854362131819533No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18570.309686844396119No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15970.26632735083500375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12820.21379565671288342No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11420.19044823710305217No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11140.18577875318108594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9600.16009659161027154No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9530.15892922062978No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8680.14475400158095383No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8660.1444204670150991No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7540.1257425313272341No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7420.1237413239321057No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7120.11873830544428471No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6300.10506338824424069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)