FastQCFastQC Report
Wed 31 May 2023
EGAF00007944202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576772
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30940.5364338074663818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19540.338782049059247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14700.2548667411039371No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8660.15014598489524456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8470.14685178892179232No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8270.1433842142128952No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7620.13211459640897963No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6920.11997808492783978No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6610.11460334412904925No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6440.11165590562648671No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5890.1021200751770197No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5890.1021200751770197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)