FastQCFastQC Report
Wed 31 May 2023
EGAF00007944206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545123
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80741.481133615716086No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29380.5389609317530173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14970.2746169213186749No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13610.24966842345672444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12460.22857226717639872No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8630.15831289452105304No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7130.13079616893801949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5880.10786556428549153No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.10346288819220616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)