FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531936
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28390.533710822354569No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15490.2912004451663358No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15400.28950851230223185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7120.13385068880466824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6840.12858689767190037No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6540.12294712145822052No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.10696775551946099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)